PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4191s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 219aa    MW: 23987 Da    PI: 9.316
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4191s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.83.5e-3546103359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++
  Cagra.4191s0001.1.p  46 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 103
                          799*****************************99********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-164799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-2947101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-3148100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.71749100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.61E-6174216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-13179218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLEVRAMDHM TPKSPEPESE TPIRIQPAKP ISFSNGFIKR HHHNVTVTYK ECLKNHAAAI  60
GGHALDGCGE FMPSPSSTPS DPTSLKCAAC GCHRNFHRRD PDDSSAALPP SSLPLSSTTT  120
AAIEYQPHHR HHPLPPPLPR SPNSSSPPPI SSSYMLLALS DLNFSAAAAA AGRHNNNIST  180
TPGSRKRFRT KFSSSQKEKM HEFADKIGWK IQKRDEDNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171881e-131AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBankAP0020491e-131AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBankAY0931711e-131AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankAY1288201e-131AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankCP0026861e-131CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291497.11e-105hypothetical protein CARUB_v10017644mg
SwissprotQ9LHF01e-91ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLR0HGU01e-105R0HGU0_9BRAS; Uncharacterized protein
STRINGAT3G28920.13e-89(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-53homeobox protein 34